Package: causalBatch
Type: Package
Title: Causal Batch Effects
Version: 1.4.0
Date: 2025-01-07
Authors@R: 
  c(person(given="Eric W.", family="Bridgeford", role=c("aut", "cre"),
    email="ericwb95@gmail.com"),
    person(given="Michael", family="Powell", role="ctb"),
    person(given="Brian", family="Caffo", role="ctb"),
    person(given="Joshua T.", family="Vogelstein", role="ctb")
  )
Maintainer: Eric W. Bridgeford <ericwb95@gmail.com>
Description: Software which provides numerous functionalities for
        detecting and removing group-level effects from
        high-dimensional scientific data which, when combined with
        additional assumptions, allow for causal conclusions,
        as-described in our manuscripts Bridgeford et al. (2024)
        <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023)
        <doi:10.48550/arXiv.2307.13868>. Also provides a number of
        useful utilities for generating simulations and balancing
        covariates across multiple groups/batches of data via matching
        and propensity trimming for more than two groups.
Depends: R (>= 4.2.0)
biocViews:
Imports: cdcsis, sva, MatchIt, nnet, dplyr, magrittr, genefilter,
        BiocParallel, utils, np
URL: https://github.com/neurodata/causal_batch
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: tidyr, ggpubr, knitr, rmarkdown, parallel, testthat (>=
        3.0.0), covr, roxygen2, ks, ggplot2
License: GPL-3
RoxygenNote: 7.3.0
Config/testthat/edition: 3
Config/pak/sysreqs: make libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://neurodata.r-universe.dev
Date/Publication: 2025-03-13 21:16:16 UTC
RemoteUrl: https://github.com/neurodata/causal_batch
RemoteRef: HEAD
RemoteSha: b73e581699c2205744f3d84dab74dcb688eb5987
NeedsCompilation: no
Packaged: 2026-06-09 06:15:52 UTC; root
Author: Eric W. Bridgeford [aut, cre],
  Michael Powell [ctb],
  Brian Caffo [ctb],
  Joshua T. Vogelstein [ctb]